Normally I use masterballs, that I trade over my GBA games, but occasionally I have caught pokemon with other pokeballs (lucky)
Zapdos/Moltres - pokeballs :D
Kyogre - Net Ball
Azelf, Uxie, Groudon, - Timer Balls
Palkia - Dusk Ball
But with the rest of the ones I have I use a masterball because I...